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HFEPX · Eval paper review

A Multi-Stage Validation Framework for Trustworthy Large-scale Clinical Information Extraction using Large Language Models

Maria Mahbub, Gregory M. Dams, Josh Arnold, Caitlin Rizy +8 more

Published

Apr 7, 2026

Citations

0

Trust level

High

Usefulness score

75/100 (High)

Extraction confidence

80% (High)

Derived from extracted protocol signals and abstract evidence.

Rater population

Domain Experts

Signals refreshed

Apr 7, 2026

Should you rely on this paper?

This paper has strong direct human-feedback and evaluation protocol signal and is suitable as a primary eval pipeline reference.

Use this as a practical starting point for protocol research, then validate against the original paper.

Best use

Primary protocol reference for eval design

Use if you need

A concrete protocol example with enough signal to inform rater workflow design.

What to verify

Validate the exact study setup in the full paper before operational use.

Main weakness

No major weakness surfaced.

Human feedback signal
Detected
From extracted signals
Evaluation signal
Detected
Eval setup described
Usefulness for eval research
75/100
High-confidence candidate

Use this as a primary source when designing or comparing eval protocols.

Abstract

Large language models (LLMs) show promise for extracting clinically meaningful information from unstructured health records, yet their translation into real-world settings is constrained by the lack of scalable and trustworthy validation approaches. Conventional evaluation methods rely heavily on annotation-intensive reference standards or incomplete structured data, limiting feasibility at population scale. We propose a multi-stage validation framework for LLM-based clinical information extraction that enables rigorous assessment under weak supervision. The framework integrates prompt calibration, rule-based plausibility filtering, semantic grounding assessment, targeted confirmatory evaluation using an independent higher-capacity judge LLM, selective expert review, and external predictive validity analysis to quantify uncertainty and characterize error modes without exhaustive manual annotation. We applied this framework to extraction of substance use disorder (SUD) diagnoses across 11 substance categories from 919,783 clinical notes. Rule-based filtering and semantic grounding removed 14.59% of LLM-positive extractions that were unsupported, irrelevant, or structurally implausible. For high-uncertainty cases, the judge LLM's assessments showed substantial agreement with subject matter expert review (Gwet's AC1=0.80). Using judge-evaluated outputs as references, the primary LLM achieved an F1 score of 0.80 under relaxed matching criteria. LLM-extracted SUD diagnoses also predicted subsequent engagement in SUD specialty care more accurately than structured-data baselines (AUC=0.80). These findings demonstrate that scalable, trustworthy deployment of LLM-based clinical information extraction is feasible without annotation-intensive evaluation.

What we could verify

These are the protocol signals we could actually recover from the available paper metadata. Use them to decide whether this paper is worth deeper reading.

Human Feedback Types

strong

Expert Verification

Directly usable for protocol triage.

"Large language models (LLMs) show promise for extracting clinically meaningful information from unstructured health records, yet their translation into real-world settings is constrained by the lack of scalable and trustworthy validation approaches."

Evaluation Modes

strong

Automatic Metrics

Includes extracted eval setup.

"Large language models (LLMs) show promise for extracting clinically meaningful information from unstructured health records, yet their translation into real-world settings is constrained by the lack of scalable and trustworthy validation approaches."

Quality Controls

strong

Calibration, Adjudication

Calibration/adjudication style controls detected.

"The framework integrates prompt calibration, rule-based plausibility filtering, semantic grounding assessment, targeted confirmatory evaluation using an independent higher-capacity judge LLM, selective expert review, and external predictive validity analysis to quantify uncertainty and characterize error modes without exhaustive manual annotation."

Benchmarks / Datasets

missing

Not extracted

No benchmark anchors detected.

"Large language models (LLMs) show promise for extracting clinically meaningful information from unstructured health records, yet their translation into real-world settings is constrained by the lack of scalable and trustworthy validation approaches."

Reported Metrics

strong

F1, Agreement

Useful for evaluation criteria comparison.

"For high-uncertainty cases, the judge LLM's assessments showed substantial agreement with subject matter expert review (Gwet's AC1=0.80)."

Rater Population

strong

Domain Experts

Helpful for staffing comparability.

"The framework integrates prompt calibration, rule-based plausibility filtering, semantic grounding assessment, targeted confirmatory evaluation using an independent higher-capacity judge LLM, selective expert review, and external predictive validity analysis to quantify uncertainty and characterize error modes without exhaustive manual annotation."

Benchmarks and datasets

No benchmark or dataset names were extracted from the available abstract.

Reported metrics

f1agreement
Human feedback details
Uses human feedback
Yes
Feedback types
Expert Verification
Rater population
Domain Experts
Expertise required
Medicine, Multilingual
Evaluation details
Evaluation modes
Automatic Metrics
Agentic eval
None
Quality controls
Calibration, Adjudication
Evidence quality
High
Use this page as
Primary protocol reference for eval design

Research brief

Metadata summary

Large language models (LLMs) show promise for extracting clinically meaningful information from unstructured health records, yet their translation into real-world settings is constrained by the lack of scalable and trustworthy validation approaches.

Based on abstract + metadata only. Check the source paper before making high-confidence protocol decisions.

Key takeaways

  • Large language models (LLMs) show promise for extracting clinically meaningful information from unstructured health records, yet their translation into real-world settings is constrained by the lack of scalable and trustworthy validation approaches.
  • Conventional evaluation methods rely heavily on annotation-intensive reference standards or incomplete structured data, limiting feasibility at population scale.
  • We propose a multi-stage validation framework for LLM-based clinical information extraction that enables rigorous assessment under weak supervision.

Researcher actions

  • Compare this paper against nearby papers in the same arXiv category before using it for protocol decisions.
  • Validate inferred eval signals (Automatic metrics) against the full paper.
  • Use related-paper links to find stronger protocol-specific references.

Caveats

  • Generated from abstract + metadata only; no PDF parsing.
  • Signals below are heuristic and may miss details reported outside the abstract.

Contribution summary

  • Conventional evaluation methods rely heavily on annotation-intensive reference standards or incomplete structured data, limiting feasibility at population scale.
  • We propose a multi-stage validation framework for LLM-based clinical information extraction that enables rigorous assessment under weak supervision.
  • Using judge-evaluated outputs as references, the primary LLM achieved an F1 score of 0.80 under relaxed matching criteria.

Why it matters for eval

  • Conventional evaluation methods rely heavily on annotation-intensive reference standards or incomplete structured data, limiting feasibility at population scale.
  • Using judge-evaluated outputs as references, the primary LLM achieved an F1 score of 0.80 under relaxed matching criteria.

Researcher checklist

  • Human feedback protocol is explicit

    Detected: Expert Verification

  • Evaluation mode is explicit

    Detected: Automatic Metrics

  • Quality control reporting appears

    Detected: Calibration, Adjudication

  • Benchmark or dataset anchors are present

    No benchmark/dataset anchor extracted from abstract.

  • Metric reporting is present

    Detected: f1, agreement