Cobaya: code for Bayesian analysis of hierarchical physical models
Abstract
Domain fit: Niche / domain-specific · No strong AI-core implementation/artifact signals were detected from current providers.
Abstract We present , a general-purpose Bayesian analysis code aimed at models with complex internal interdependencies. Without the need for specific code by the user, interdependencies between different stages of a model pipeline are exploited for sampling efficiency: intermediate results are automatically cached, and parameters are grouped in blocks according to their dependencies and optimally sorted, taking into account their individual computational costs, so as to minimize the cost of their variation during sampling, thanks to a novel algorithm. Cobaya allows exploration of posteriors using a range of Monte Carlo samplers, and also has functions for maximization and importance-reweighting of Monte Carlo samples with new priors and likelihoods. Cobaya is written in Python in a modular way that allows for extendability, use of calculations provided by external packages, and dynamical reparameterization without modifying its source. It can exploit hybrid OpenMP/MPI parallelization, and has sub-millisecond overhead per posterior evaluation. Though Cobaya is a general purpose statistical framework, it includes interfaces to a set of cosmological Boltzmann codes and likelihoods (the latter being agnostic with respect to the choice of the former), and automatic installers for external dependencies.
Results and benchmarks
Abstract We present , a general-purpose Bayesian analysis code aimed at models with complex internal interdependencies.
Benchmark evidence is limited
Evidence graph: 2 refs, 1 links.
Utility signals: depth 65/100, grounding 58/100, status medium.
Implementation
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Time to first repro: a few days
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Validation caveat
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Research context
683
Citations
27
References
Tasks
Monte Carlo method, Computer science, Pipeline (software), Python (programming language), Markov chain Monte Carlo, Code (set theory), Prior probability, Exploit
Methods
Bayesian probability, Algorithm, Bayesian statistics, Bayesian inference, Monte Carlo molecular modeling
Domains
Physics, Monte Carlo method in statistical physics, Statistical physics
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